{
  "_id": "6a215526cd65a98ecbd2e09e",
  "Package": "cellchatr",
  "Title": "Fast CellChat Database Querying Backed by Rust",
  "Version": "0.99.0",
  "Authors@R": "person(\"Mayank\", \"Gandhi\", , \"135.mayankgandhi@gmail.com\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0009-0000-3448-9308\"))",
  "Description": "Accelerates three bottleneck steps in the CellChat\nworkflow using Rust via extendr. Provides parallel Wilcoxon\nrank-sum testing with tie correction, HashSet-based gene\nfiltering, and ligand-receptor pair matching as drop-in\nreplacements for CellChat functions. Achieves up to 183x\nspeedup on Wilcoxon testing using Rayon parallelism.",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.3",
  "Config/rextendr/version": "0.4.2",
  "SystemRequirements": "Cargo (Rust's package manager), rustc >= 1.65.0, xz",
  "URL": "https://github.com/mayankgandhi13/cellchatr",
  "BugReports": "https://github.com/mayankgandhi13/cellchatr/issues",
  "biocViews": "SingleCell, GeneExpression, Transcriptomics,\nStatisticalMethod, Software",
  "Config/testthat/edition": "3",
  "VignetteBuilder": "knitr",
  "Config/pak/sysreqs": "xz-utils libclang-dev",
  "Repository": "https://mayankgandhi13.r-universe.dev",
  "Date/Publication": "2026-05-05 03:18:28 UTC",
  "RemoteUrl": "https://github.com/mayankgandhi13/cellchatr",
  "RemoteRef": "main",
  "RemoteSha": "842b32ee5a3766255991d2ec4443ea2577e242dd",
  "RemoteSubdir": ".",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-06-04 10:28:05 UTC",
    "User": "root"
  },
  "Author": "Mayank Gandhi [aut, cre] (ORCID:\n<https://orcid.org/0009-0000-3448-9308>)",
  "Maintainer": "Mayank Gandhi <135.mayankgandhi@gmail.com>",
  "MD5sum": "3213ce8334449163b9ebdb34338fe1bf",
  "_user": "mayankgandhi13",
  "_type": "src",
  "_file": "cellchatr_0.99.0.tar.gz",
  "_fileid": "615f0788b28ef67b4e420085d9fd9f9e19e6bbe138068be07e6c5544d7881463",
  "_filesize": 107620,
  "_sha256": "615f0788b28ef67b4e420085d9fd9f9e19e6bbe138068be07e6c5544d7881463",
  "_created": "2026-06-04T10:28:05.000Z",
  "_published": "2026-06-04T10:36:22.811Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79499596839,
      "time": 158,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7409157835"
    },
    {
      "job": 79499596771,
      "time": 135,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7409149607"
    },
    {
      "job": 79499596861,
      "time": 149,
      "config": "linux-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7409154518"
    },
    {
      "job": 79499596776,
      "time": 129,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7409147464"
    },
    {
      "job": 79499596806,
      "time": 210,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7409161076"
    },
    {
      "job": 79499596788,
      "time": 289,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7409192972"
    },
    {
      "job": 79499596885,
      "time": 131,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7409141728"
    },
    {
      "job": 79499596899,
      "time": 449,
      "config": "macos-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7409238562"
    },
    {
      "job": 79499143861,
      "time": 171,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7409103717"
    },
    {
      "job": 79499596745,
      "time": 125,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7409145462"
    },
    {
      "job": 79499596819,
      "time": 186,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7409166212"
    },
    {
      "job": 79499596952,
      "time": 128,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7409146591"
    },
    {
      "job": 79499596905,
      "time": 130,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7409147257"
    }
  ],
  "_buildurl": "https://github.com/r-universe/mayankgandhi13/actions/runs/26946022510",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/mayankgandhi13/cellchatr",
  "_commit": {
    "id": "842b32ee5a3766255991d2ec4443ea2577e242dd",
    "author": "mayankgandhi13 <135.mayankgandhi@gmail.com>",
    "committer": "mayankgandhi13 <135.mayankgandhi@gmail.com>",
    "message": "fix: make vignette conditional on CellChat availability\n",
    "time": 1777951108
  },
  "_maintainer": {
    "name": "Mayank Gandhi",
    "email": "135.mayankgandhi@gmail.com",
    "login": "mayankgandhi13",
    "uuid": 80269327
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.4.0",
      "role": "Depends"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    },
    {
      "package": "CellChat",
      "role": "Suggests"
    },
    {
      "package": "microbenchmark",
      "role": "Suggests"
    }
  ],
  "_owner": "mayankgandhi13",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-18",
      "n": 19
    },
    {
      "week": "2026-19",
      "n": 1
    }
  ],
  "_tags": [],
  "_topics": [
    "singlecell",
    "geneexpression",
    "transcriptomics",
    "statisticalmethod",
    "software",
    "cellchat",
    "cellchatr",
    "rust",
    "cargo"
  ],
  "_stars": 1,
  "_contributors": [
    {
      "user": "mayankgandhi13",
      "count": 20,
      "uuid": 80269327
    }
  ],
  "_userbio": {
    "uuid": 80269327,
    "type": "user",
    "name": "Mayank Gandhi"
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/cellchatr"
  },
  "_devurl": "https://github.com/mayankgandhi13/cellchatr",
  "_cargo": true,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/cellchatr.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_cranurl": false,
  "_exports": [
    "hello_world",
    "rust_match_lr_pairs",
    "rust_subset_genes",
    "rust_wilcoxon_filter"
  ],
  "_help": [
    {
      "page": "hello_world",
      "title": "Return string '\"Hello world!\"' to R.",
      "topics": [
        "hello_world"
      ]
    },
    {
      "page": "rust_match_lr_pairs",
      "title": "Match overexpressed genes against CellChatDB ligand-receptor pairs.",
      "topics": [
        "rust_match_lr_pairs"
      ]
    },
    {
      "page": "rust_subset_genes",
      "title": "Filter expression matrix genes to only those present in CellChatDB.",
      "topics": [
        "rust_subset_genes"
      ]
    },
    {
      "page": "rust_wilcoxon_filter",
      "title": "Identify over-expressed genes per cell type using Wilcoxon rank-sum test.",
      "topics": [
        "rust_wilcoxon_filter"
      ]
    }
  ],
  "_readme": "https://github.com/mayankgandhi13/cellchatr/raw/main/./README.md",
  "_rundeps": [],
  "_vignettes": [
    {
      "source": "cellchatr-workflow.Rmd",
      "filename": "cellchatr-workflow.html",
      "title": "cellchatr: Fast CellChat Database Querying with Rust",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Overview",
        "Setup",
        "Step 1 — Load CellChatDB",
        "Step 2 — Subset Expression Genes to CellChatDB (rust_subset_genes)",
        "Step 3 — Identify Overexpressed Genes (rust_wilcoxon_filter)",
        "Step 4 — Match to L-R Pairs (rust_match_lr_pairs)",
        "Benchmark",
        "Session Info"
      ],
      "commits": 0
    }
  ],
  "_score": 3,
  "_indexed": true,
  "_nocasepkg": "cellchatr",
  "_universes": [
    "mayankgandhi13"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.99.0",
      "date": "2026-06-04T10:30:53.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "842b32ee5a3766255991d2ec4443ea2577e242dd",
      "fileid": "69c7f06f86c898b0ffc0a6a09557e963fa5d73d46f8bb879a5525ae432526cd7",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mayankgandhi13/actions/runs/26946022510"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.99.0",
      "date": "2026-06-04T10:30:26.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "842b32ee5a3766255991d2ec4443ea2577e242dd",
      "fileid": "2a81a3bcce05809283e7eae3af47e0bdda69722e6f7f5a8cc79ecbc66895cbf1",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mayankgandhi13/actions/runs/26946022510"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.99.0",
      "date": "2026-06-04T10:30:43.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "842b32ee5a3766255991d2ec4443ea2577e242dd",
      "fileid": "e15b85a31ca05051c795f93ab482d7cb000a8722abccaca2154b4816fe4b7e61",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mayankgandhi13/actions/runs/26946022510"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.99.0",
      "date": "2026-06-04T10:30:22.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "842b32ee5a3766255991d2ec4443ea2577e242dd",
      "fileid": "a30dc97f6a3cd91b8b2b72595a2cef4d4ab3321f03f9abb5d9aa24955517e8a5",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mayankgandhi13/actions/runs/26946022510"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.99.0",
      "date": "2026-06-04T10:30:55.000Z",
      "arch": "aarch64",
      "commit": "842b32ee5a3766255991d2ec4443ea2577e242dd",
      "fileid": "01f68d13b39b9b552d45abfc7c39cb9bd75a189f47ce919b314749a832aa0af5",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mayankgandhi13/actions/runs/26946022510"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.99.0",
      "date": "2026-06-04T10:32:15.000Z",
      "arch": "x86_64",
      "commit": "842b32ee5a3766255991d2ec4443ea2577e242dd",
      "fileid": "52dc0d5beba9d409d36c20457674f58989b301f47e05138ee21ca98c1f20d35b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mayankgandhi13/actions/runs/26946022510"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.99.0",
      "date": "2026-06-04T10:30:05.000Z",
      "arch": "aarch64",
      "commit": "842b32ee5a3766255991d2ec4443ea2577e242dd",
      "fileid": "8b78c4348b67ef6300bacd3e4a09c808ed00c555397a83d5a83cb33749887cfd",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mayankgandhi13/actions/runs/26946022510"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.99.0",
      "date": "2026-06-04T10:33:54.000Z",
      "arch": "x86_64",
      "commit": "842b32ee5a3766255991d2ec4443ea2577e242dd",
      "fileid": "d684c424c585db1439c8fa5de8acebfa0328bbba2fa997dba4310b80931379ee",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mayankgandhi13/actions/runs/26946022510"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.99.0",
      "date": "2026-06-04T10:30:28.000Z",
      "arch": "emscripten",
      "commit": "842b32ee5a3766255991d2ec4443ea2577e242dd",
      "fileid": "c9ccedb8facfe5be2dcbd343e6a9ed634a376b70c82217e790d9079d48dd70c1",
      "status": "success",
      "buildurl": "https://github.com/r-universe/mayankgandhi13/actions/runs/26946022510"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.99.0",
      "date": "2026-06-04T10:29:51.000Z",
      "arch": "x86_64",
      "commit": "842b32ee5a3766255991d2ec4443ea2577e242dd",
      "fileid": "3440fe8209950cff897a957fa0ba1c648b237f90745771c77a04eb9b267e9c2e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mayankgandhi13/actions/runs/26946022510"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.99.0",
      "date": "2026-06-04T10:29:41.000Z",
      "arch": "x86_64",
      "commit": "842b32ee5a3766255991d2ec4443ea2577e242dd",
      "fileid": "be34b21e3a77558ac93c64c50a5f1159db286690acd923e88666fac1b41abf23",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mayankgandhi13/actions/runs/26946022510"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.99.0",
      "date": "2026-06-04T10:29:44.000Z",
      "arch": "x86_64",
      "commit": "842b32ee5a3766255991d2ec4443ea2577e242dd",
      "fileid": "6c8afad5ef28ee5e5f4b17630d8dab9e2165cd4f4fb3d4b29fa5e84fc51fdb84",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mayankgandhi13/actions/runs/26946022510"
    }
  ]
}